PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn373271
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family LBD
Protein Properties Length: 226aa    MW: 24320.6 Da    PI: 7.6889
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn373271genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.55.1e-292103197
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C+++Cvl+  +     p++q +++ +v+k+FG++ ++++l+++p ++r+++++sl++eA+ r+ +Pv+Gavg++++++++ +q+++++
  Achn373271   2 SCNGCRVLRKGCSDNCVLRTSLqwiesPEAQGHATVFVAKFFGRAGLMSFLSSIPVNQRSALFQSLLFEACGRTVNPVNGAVGLLWTGNWHACQAAVQT 100
                 6***********************************************************************************************998 PP

      DUF260  95 all 97 
                 +l+
  Achn373271 101 VLR 103
                 776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.9651107IPR004883Lateral organ boundaries, LOB
PfamPF031955.4E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDNCVLR TSLQWIESPE AQGHATVFVA KFFGRAGLMS FLSSIPVNQR  60
SALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHACQAAVQT VLRGGALRPI PKFLAGGALS  120
PPDLDDPSEA EVTCTDMFNI HQNPSPIPKS KAPKRRQVNE RAENQLADLG LSLTPRSAVE  180
EMSSKNSGEK RRDGTPSMNS EESVTTTCFE SSGFGAEPKL LNFFD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284296.17e-97PREDICTED: LOB domain-containing protein 38
SwissprotQ9SN234e-79LBD38_ARATH; LOB domain-containing protein 38
TrEMBLD7TT887e-97D7TT88_VITVI; Putative uncharacterized protein
STRINGVIT_07s0129g00330.t012e-96(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.13e-80LOB domain-containing protein 38